MATSS package is intended to support Macroecological Analysis of Time Series Structure. We provide functions to:
For more information about contributing code, datasets, or analyses, please check out the Contributing Guide.
You can install
MATSS from github with:
# install.packages("remotes") remotes::install_github("weecology/MATSS", build_opts = c("--no-resave-data", "--no-manual"))
This package relies on the development version of the
rdataretriever package to install datasets. Installation of this package takes a few extra steps because it runs a Python package behind the scenes. Follow the installation instructions on the
MATSS pulls data from a variety of sources, including:
Combined, there are 84052 individual time series across all of these data sources.
To get started with the data or analysis templates, we recommend you take a look at our Getting Started vignette for more details about how to interface with the datasets, use Drake to create workflows, and create research compendia.
If you have the
MATSS package installed, you can also view the vignette from within R:
Here are some examples of using
MATSS to create research compendia:
We thank Erica Christensen and Joan Meiners for their contributions and input on early prototypes of this project. This project would not be possible without the support of Henry Senyondo and the retriever team. Finally, we thank Will Landau and the drake team for their input and responsiveness to feedback.
Package development is supported through various funding sources: including the Gordon and Betty Moore Foundation’s Data-Driven Discovery Initiative, Grant GBMF4563 to E. P. White (supporting also the time of J. Simonis and H. Ye), the National Science Foundation, Grant DEB-1622425 to S. K. M. Ernest, and a National Science Foundation Graduate Research Fellowship (No. DGE-1315138 and DGE-1842473) to R. Diaz.