Process an individual BioTime dataset

Source: R/get_data_biotime.R

Filter and modify the BioTime data. Generate the abundance, covariate, and metadata tables and return the combined object.

process_biotime_dataset(
  biotime_data_tables,
  dataset_id = 10,
  save_to_file = FALSE,
  storage_path = file.path(get_default_data_path(), "biotime-prepped"),
  citation_text = NULL
)

Arguments

biotime_data_tables

full BioTime data tables
dataset_id

the study_id
save_to_file

whether to save the processed dataset to a file
storage_path

folder in which to put processed dataset
citation_text

text of citation for the database

Value

the processed BioTime dataset