# Create, Run, and Forecast Multi-model Inference TSGLM Model Runs

Source:`R/models_tsglm.R`

`tsglm-models.Rd`

Using the tscount (Liboschik et al. 2017) package to forecast time series of counts. `meta_tsglm`

: Combines the model running with the covariate preparation functions for a multi-model `tsglm`

(from the tscount (Liboschik et al. 2017) package) model. `forecast.tsglm`

: A wrapper around the `predict`

function for tsglm objects that produces a `"forecast"`

-class object.

## Usage

```
meta_tsglm(
ts,
model,
distr,
link,
lag,
submodels,
covariates,
metadata,
quiet = FALSE
)
# S3 method for class 'tsglm'
forecast(object, h, level, ...)
```

## Arguments

- ts
Non-negative

`integer`

-conformable vector of rodent abundances to use in forecasting. See`prepare_abundance`

.- model
A named

`list`

of model linear predictors. See`tsglm`

.- distr
`character`

of the response distribution. See`tsglm`

.- link
`character`

of the link function. See`tsglm`

.- lag
`integer`

-conformable value of the number of timesteps used in a bulk lagging for all covariates in all submodels.- submodels
`list`

of`character`

vectors defining the covariates to include in each of the submodels.- covariates
`data.frame`

of covariates used in modeling. See`prepare_covariates`

.- metadata
`list`

of model control elements. See`prepare_metadata`

.- quiet
`logical`

indicator controlling if messages are printed.- object
A

`tsglm`

-class object.- h
`integer`

-conformable number of steps forward to forecast. Passed into`predict`

as`n.ahead`

.- level
`numeric`

of the confidence level to use in summarizing the predictions.- ...
Additional parameters passed into

`predict`

.

## Value

`meta_tsglm`

: An object of class `"tsglm"`

with additional elements defining the submodel and lag. `forecast.tsglm`

: `list`

with `"forecast"`

-class with named elements including `"mean"`

, `"lower"`

, `"upper"`

, and `"newxreg"`

(if provided for prediction) as well as the other elements returned by `predict`

.

## References

Liboschik T., K. Fokianos, and R. Fried. 2017. tscount: An R Package for Analysis of Count Time Series Following Generalized Linear Models. Journal of Statistical Software, 82:1-51. URL.

## See also

Helper functions for prefab models:
`prefabricated models`

,
`runjags models`

## Examples

```
if (FALSE) { # \dontrun{
main1 <- file.path(tempdir(), "metatsglm")
setup_dir(main = main1)
dataset <- "all"
species <- "DM"
model <- "pevGARCH"
abundance <- prepare_abundance(main = main1,
dataset = dataset,
species = species,
model = model)
model_controls <- models_controls(main = main1,
models = model)[[model]]
metadata <- read_metadata(main = main1)
newmoons <- read_newmoons(main = main1)
covariates <- read_covariates(main = main1)
model <- list(past_obs = 1, past_mean = 13)
distr <- "poisson"
link <- "log"
lag <- 6
submodels <- list(c("mintemp", "ndvi"),
c("maxtemp"),
c("meantemp"),
c("precipitation"),
c(NULL))
fit_tsglm <- meta_tsglm(ts = abundance,
model = model,
distr = distr,
link = link,
lag = lag,
submodels = submodels,
covariates = covariates,
metadata = metadata,
quiet = FALSE)
newmoons_in <- match(metadata$time$forecast_newmoonnumbers - lag, covariates$newmoonnumber)
newxreg <- covariates[newmoons_in, unlist(fit_tsglm$submodel)]
forecast(object = fit_tsglm,
h = metadata$time$lead_time_newmoons,
level = metadata$confidence_level,
newxreg = newxreg)
unlink(main1, recursive = TRUE)
} # }
```