Function reference • portalcasting

All functions

write_directory_configuration() read_directory_configuration() read_directory_settings() update_directory_configuration(): Create, Update, and Read the Directory Configuration File

create_dir() update_dir() update_production() update_sandbox() setup_dir() setup_production() setup_sandbox(): Create or Update the Structure of a Directory and Fill It with Content or Update an Existing Directory

fill_dir() fill_data() fill_app() fill_resources() fill_forecasts() fill_fits() fill_models(): Fill a Portalcasting Directory with Basic Components

paths() models_rmd_path() models_html_path() about_md_path() rodents_profiles_html_path() rodents_profiles_csv_path() rodents_datasets_controls_path() models_controls_path() rodents_dataset_path() species_names_path() climate_forecasts_paths() forecasts_metadata_path() forecasts_evaluations_path() forecasts_results_path() newmoons_path() covariates_path() metadata_path() www_path() app_paths() data_path() forecasts_path() fits_path() models_path() resources_path(): Create a List of Full Directory Paths

directory_settings() time_settings() directory_files() directory_subdirectories() directory_resources() production_settings() sandbox_settings(): Create a Directory Settings List

download_archive(): Download the Portal Predictions Repository Archive

download_climate_forecasts() NMME_urls(): Download Climate Forecasts

ensemble_forecasts(): Combine (Ensemble) Casts

evaluate_forecasts() evaluate_forecast() read_forecasts_evaluations(): Evaluate Forecasts

file_ext(): Determine a File's Extension

foy(): Calculate the Fraction of the Year from a Date

ifnull(): Replace a Value with an Alternative if it is NULL

messageq() break_line() break_lines() castle(): Functions for Message Generation

named_null_list(): Create a Named Empty List

dataset_controls_template() add_new_dataset() new_dataset_controls() new_dataset_metadata() new_dataset_fun() new_dataset_args(): Facilitate Adding Datasets to a Directory

model_controls_template() add_new_model() new_model_controls() new_model_metadata() new_model_fit() new_model_forecast() new_model_interpolate() new_model_datasets() new_model_response(): Facilitate Adding Models to a Directory

package_version_finder(): Find an Object's Host Package and Version Information

plot_forecasts_error_lead() plot_forecasts_cov_RMSE() plot_forecast_point() plot_forecast_ts() plot_covariates(): Visualize Portalcasting Data and Forecasts

portalcast() cast() make_model_combinations(): Forecast Portal Rodents Models

available_newmoonnumbers() selected_newmoonnumber() available_historic_end_newmoonnumbers() selected_historic_end_newmoonnumber() available_species() selected_species() available_datasets() selected_dataset() available_models() selected_model(): Selection Helper Functions for the Portalcasting App

app_events() app_server() initial_reactive_values() initial_output() event_reaction() update_reactive_values() update_output() update_input(): Generate the Server Code for the Web App

app_ui() app_theme() main_panel() title_panel() subtitle_panel() about_tab() models_tab() rodents_profiles_tab() forecast_tab() forecast_tab_input_selection_checks_row() forecast_tab_input_selection_row() forecast_tab_input_selection_row_species() forecast_tab_input_selection_row_dataset() forecast_tab_input_selection_row_model() forecast_tab_input_selection_row_historic_end_newmoonnumber() evaluation_tab() evaluation_tab_input_selection_checks_row() evaluation_tab_input_selection_row() evaluation_tab_input_selection_row_species() evaluation_tab_input_selection_row_dataset() evaluation_tab_input_selection_row_model() evaluation_tab_input_selection_row_historic_end_newmoonnumber() evaluation_tab_input_selection_row_newmoonnumber() covariates_tab() data_sources_section() portal_project_href() portal_data_href() portal_weather_href() portal_ndvi_href() write_rodents_profiles_tab_html() write_models_tab_html(): Generate the User Interface for the Web App

run_app() global_list(): Build and Launch the Portal Forecast Web Application

post_process(): After portalcast and evaluate_forecast run post_process to zip files

prefab_models_controls() prefab_models(): Provide the Names or Controls for the Prefabricated Models

prefab_datasets() prefab_datasets_controls() prefab_species(): Provide the Names or Controls for the Prefabricated Rodent Datasets

prepare_covariates(): Prepare Covariate Data for Casting

prepare_metadata(): Prepare a Model-Running Metadata List

write_models_controls() write_models_scripts() read_models_controls() models_controls(): Prepare Portalcasting Models

prepare_newmoons() add_forecast_newmoons(): Prepare Lunar Data for the Portalcasting Repository

prepare_abundance() prepare_rodents() prepare_dataset() read_datasets_controls() datasets_controls() write_datasets_controls(): Prepare Rodents Data for Forecasting

process_model_output() read_forecast_table() read_forecasts_tables() add_observations_to_forecast_table() read_forecast_metadata() read_model_fit() read_model_forecast() select_forecasts() read_forecasts_metadata(): Process and Save Forecast Output to Files

write_data() read_data() read_rodents_dataset() read_rodents() read_newmoons() read_covariates() read_metadata() read_climate_forecasts(): Read from and Write to a Data File

round_na.interp(): Round an Interpolated Series

runjags_inits() runjags_model() runjags_monitors() runjags_data() fit_runjags() forecast(<runjags>) runjags_controls(): Create and Run a runjags Portalcasting Model

meta_tsglm() forecast(<tsglm>): Create, Run, and Forecast Multi-model Inference TSGLM Model Runs

update_list(): Update a List's Elements

zip_unzip(): Zip and unzip forecasts by forecast date