Function reference • portalr

Data Retrieval Functions to download and update data
`download_observations()`	Download the PortalData repo
`check_for_newer_data()`	Check for latest version of data files
`check_default_data_path()` `get_default_data_path()` `use_default_data_path()`	Manage the default path for downloading Portal Data into
`get_dataset_citation()`	Return Citation for Portal Data
Data Summaries Functions to return data summaries
`summarize_rodent_data()` `abundance()` `biomass()` `energy()` `rates()` `summarise_rodent_data()`	Generate summaries of Portal rodent data
`summarize_plant_data()` `plant_abundance()` `summarise_plant_data()`	Generate summaries of Portal plant data
`summarize_individual_rodents()` `summarise_individual_rodents()`	Return cleaned Portal rodent individual data
`ndvi()`	NDVI by calendar month or lunar month
`weather()`	Weather by day, calendar month, or lunar month
`bait_presence_absence()`	Ant Bait Presence Absence
`colony_presence_absence()`	Ant Colony Presence Absence
`shrub_cover()`	Generate percent cover from Portal plant transect data
`fcast_ndvi()`	Forecast ndvi using a seasonal auto ARIMA
`get_future_newmoons()`	Get future newmoon dates and numbers
`phenocam()`	Phenocam data products by day, calendar month, or lunar month
Unprocessed Data Functions to load in raw or otherwise unprocessed data
`load_datafile()`	read in a raw datafile from the downloaded data or the GitHub repo
`load_rodent_data()` `load_plant_data()` `load_ant_data()` `load_trapping_data()`	Read in the Portal data files
Data Processing Functions to do various data processing steps
`add_seasons()` `yearly()`	Add Seasons
`clean_plant_data()`	Do basic cleaning of Portal plant data
`clean_rodent_data()`	Do basic cleaning of Portal rodent data
`fill_missing_ndvi()`	Fill in historic ndvi data to the complete timeseries being fit
`find_incomplete_censuses()`	Period code for incomplete censuses
Utilities Formatting
`format_todo()`	Format content as an action to be performed by the user
`format_value()`	Format content as a variable value
`format_code()`	Format content as code
`na_conformer()`	Conform NA entries to "NA" entries
`return_if_null()`	If a Value is NULL, Trigger the Parent Function's Return
`rodent_species()` `forecasting_species()`	Rodent species abbreviations
`portalr` `portalr-package`	Creates summaries of the Portal data

Reference

Data Retrieval

Data Summaries

Unprocessed Data

Data Processing

Utilities